DSOSU-Dev

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====== Fastp Install ======
Compiling from source requires three libraries: libdeflate, libisal and libtool. In addition, cmake is required as well.\\
Source code for libtool [[https://www.gnu.org/software/libtool/|here]]\\
libisal requires nasm to compile [[https://www.nasm.us/|here]]\\
1. For nasm cd to the source folder run
  configure --prefix=/home/.hub_local
  make
  make install
2. Download and build libtool, cd to source folder
  ./configure --prefix=/home/.hub_local
  make
  make install
  
3. download and build libisal
  git clone https://github.com/intel/isa-l.git
  mkdir /home/.hub_local/lib64
  cd isa-l
  ./autogen.sh
  ./configure --prefix=/home/.hub_local --libdir=/home/.hub_local/lib64
  make
  sudo make install
The above didn't work. Try the following:
  make -f Makefile.ux
Then copy the libisal.so in the bin folder to the /home/.hub_local/lib folder. In the /home/.hub_local/lib folder do
  ln libisal.so libisal.so.2 
3. download and build libdeflate 
  git clone https://github.com/ebiggers/libdeflate.git
  cd libdeflate
  cmake -B build
  cmake --build build
  cmake --install-prefix=/home/.hub_local build
  cmake --install build
4. download and build fast
  git clone https://github.com/OpenGene/fastp.git
Need to edt the Make file in the fastp folder and set the following lines:
  PREFIX ?= /home/.hub_local
  BINDIR ?= $(PREFIX)/bin
  INCLUDE_DIRS ?=  /home/.hub_local/include
  LIBRARY_DIRS ?= /home/.hub_local/lib64 /home/.hub_local/lib
Then compile
  # build
  cd fastp
  make
  # Install
  make install
To run the binary you need to set the library path in the /home/.hub_local/autosourced_by_bashrcs file. Add the following line to the end of the file.
  export LD_LIBRARY_PATH=/home/.hub_local/lib64
  
That should do it.