wiki:software:fastp
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Fastp Install
Compiling from source requires two libraries: libdeflate and libisal. In addition, cmake is required as well.
Source code is here
libisal requires nasm to compile here
1. In the source folder run
configure --prefix=/home/.hub_local make make install
2. download and build libisal
git clone https://github.com/intel/isa-l.git mkdir /home/.hub_local/lib64 cd isa-l ./autogen.sh ./configure --prefix=/home/.hub_local --libdir=/home/.hub_local/lib64 make sudo make install
3. download and build libdeflate
git clone https://github.com/ebiggers/libdeflate.git cd libdeflate cmake -B build cmake --build build cmake --install-prefix=/home/.hub_local build cmake --install build
4. download and build fast
git clone https://github.com/OpenGene/fastp.git
Need to edt the Make file in the fastp folder and set the following lines:
PREFIX ?= /home/.hub_local BINDIR ?= $(PREFIX)/bin INCLUDE_DIRS ?= /home/.hub_local/include LIBRARY_DIRS ?= /home/.hub_local/lib64 /home/.hub_local/lib
Then compile
# build cd fastp make # Install make install
To run the binary you need to set the library path
export LD_LIBRARY_PATH=/home/.hub_local/lib64
That should do it.
wiki/software/fastp.1680821282.txt.gz · Last modified: 2023/04/06 15:48 by keistc